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Examples
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The annotated information is readily available utilizing the functionalities of network modelling tools such as Cytoscape and
BioMed Central - Latest articles Subir Nandy 2010
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Clustering results can also be visualized using tools such as Cytoscape (
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As a component of the Gaggle integration framework, Firegoose can also exchange data with Cytoscape, the R statistical package, Multiexperiment Viewer (MeV), and several other popular desktop software tools.
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Maital, whom you may remember from her report on last year's Cytoscape Developer Retreat, let us know that the two plugins she produced for her project have been downloaded more than 800 times and will likely soon replace the current search functionality in Cytoscape.
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Right at this moment I am listening to Andrew Hopkins from Dundee on chemical opportunities in system biology, at the Cytoscape conference in Amsterdam.
Archive 2007-11-01 Egon Willighagen 2007
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Right at this moment I am listening to Andrew Hopkins from Dundee on chemical opportunities in system biology, at the Cytoscape conference in Amsterdam.
Cytoscape in Amsterdam Egon Willighagen 2007
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We then compiled the layout of the network in Cytoscape, an open source software platform for visualizing molecular interaction networks
PLoS ONE Alerts: New Articles Vincent Gache et al. 2010
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Xenopus proteins were different, we provide in the Network the name of the In order to provide open access to the network, we re-compiled it in Cytoscape
PLoS ONE Alerts: New Articles Vincent Gache et al. 2010
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All three Cytoscape-based versions of MeMPIN are interactive and available online.
PLoS ONE Alerts: New Articles Vincent Gache et al. 2010
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Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks.
PLoS ONE Alerts: New Articles Vincent Gache et al. 2010
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